RNA Probes

A collection of fast and efficient tools for RNA probe design and analysis.

Select one or more programs to begin.

TFOFinder

Target designer for triplex-forming oligonucleotides (TFOs) in RNA.

smFISH

Probe design for single-molecule fluorescence in situ hybridization (smFISH), considering secondary structures.

Limitations: RNA length < 4000 nucleotides

PinMol

Molecular beacon designer for live-cell imaging of mRNA targets.